.. _api_ref: ============= API Reference ============= This is the class and function reference of *GraKeL*. In order for the user to understand how to use the package, we suggest he reads :ref:`documentation` section. :mod:`grakel.graph`: Graph class with its utility functions =========================================================== Base Class ---------- .. currentmodule:: grakel .. autosummary:: :toctree: generated/ :template: class.rst Graph Utility Functions ----------------- .. currentmodule:: grakel .. autosummary:: :toctree: generated/ :template: function.rst graph.is_adjacency graph.is_edge_dictionary graph.laplacian graph.floyd_warshall **User guide:** See the :ref:`graph` section for further details. :mod:`grakel.graph_kernels`: A kernel decorator =============================================== .. currentmodule:: grakel Graph Kernel (decorator) ------------------------ .. autosummary:: :toctree: generated/ :template: class.rst grakel.GraphKernel **User guide:** See the :ref:`graph_kernel` section for further details. :mod:`grakel.kernels`: A collection of graph kernels ==================================================== Kernels ------- .. currentmodule:: grakel .. autosummary:: :toctree: generated/ :template: kernel.rst Kernel RandomWalk RandomWalkLabeled PyramidMatch NeighborhoodHash ShortestPath ShortestPathAttr GraphletSampling SubgraphMatching WeisfeilerLehman HadamardCode NeighborhoodSubgraphPairwiseDistance LovaszTheta SvmTheta Propagation PropagationAttr OddSth MultiscaleLaplacian MultiscaleLaplacianFast HadamardCode VertexHistogram EdgeHistogram GraphHopper CoreFramework WeisfeilerLehmanOptimalAssignment **User guide:** See the :ref:`kernels` section for further details. :mod:`grakel.datasets`: Datasets ================================= Fetch ----- .. currentmodule:: grakel.datasets .. autosummary:: :toctree: generated/ :template: function_bib.rst fetch_dataset .. autosummary:: :toctree: generated/ :template: function.rst get_dataset_info **User guide:** See the :ref:`datasets` section for further details. :mod:`grakel`: Utils ================================= .. currentmodule:: grakel Use a kernel matrix as a transformer ------------------------------------ .. autosummary:: :toctree: generated/ :template: class.rst KMTransformer Cross Validation ---------------- .. autosummary:: :toctree: generated/ :template: function.rst cross_validate_Kfold_SVM Load from other file formats ---------------------------- .. autosummary:: :toctree: generated/ :template: function.rst graph_from_networkx graph_from_pandas graph_from_csv **User guide:** Usefull functions for applying to existing datasets, of other formats. .. _gd: https://ls11-www.cs.tu-dortmund.de/staff/morris/graphkerneldatasets